PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN16520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 364aa    MW: 41712.1 Da    PI: 5.0069
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN16520.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.33.2e-35171082102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkk y+++ed++++++i+ws+ g+sfv++d ++f+ ++Lp+yFkh+nf+SF+RQLn+YgF+k++++          weF++++F +g+k+ll++i+
    KHN16520.1  17 FLKKCYDMVEDRNTDSIIRWSDGGDSFVISDITQFSVTLLPTYFKHNNFSSFIRQLNIYGFRKIDTDC---------WEFANENFVRGQKHLLKNIR 104
                   9***************************************************************9987.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
    KHN16520.1 105 RRKH 108
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.67E-3513106IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.4E-3713106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.8E-5513106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-181740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-3117106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-185567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-186880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MVKSNENGSG SVSVPPFLKK CYDMVEDRNT DSIIRWSDGG DSFVISDITQ FSVTLLPTYF  60
KHNNFSSFIR QLNIYGFRKI DTDCWEFANE NFVRGQKHLL KNIRRRKHPH SADQQKALPQ  120
QNNCDEPSQE APYHGLWKEV ENLKLDKNSL TQELVKLRQH QESAENKLLL LSDRLQGMEK  180
HQQQMLSFLV MVVQSPGFMV QLLHPKENNW HLAESWNILD QDKQDDKPVA SDGMIIKYKP  240
PVGEKLKPVV PLSPGFEKQP EPELSAEGLK DLCVSSEFLK VLLDEKLSPL ENHSPFLLPD  300
LPDDGSWEQL FLGSPFMGNI QDSNKESEGH TNGGMEMEPT ISETPNENSR TFESMIVEME  360
KTRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-25710619129Heat shock factor protein 1
5d5v_B2e-25710619129Heat shock factor protein 1
5d5v_D2e-25710619129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358700.0AC235870.2 Glycine max clone GM_WBb0130P22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530926.10.0PREDICTED: heat stress transcription factor A-8
SwissprotQ9S7U54e-91HSFA8_ARATH; Heat stress transcription factor A-8
TrEMBLA0A0B2Q5F50.0A0A0B2Q5F5_GLYSO; Heat stress transcription factor A-8
STRINGGLYMA08G05220.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.13e-92heat shock transcription factor A8
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]